Analysis of real-time numerical integration methods applied to dynamic clamp experiments.
نویسندگان
چکیده
Real-time systems are frequently used as an experimental tool, whereby simulated models interact in real time with neurophysiological experiments. The most demanding of these techniques is known as the dynamic clamp, where simulated ion channel conductances are artificially injected into a neuron via intracellular electrodes for measurement and stimulation. Methodologies for implementing the numerical integration of the gating variables in real time typically employ first-order numerical methods, either Euler or exponential Euler (EE). EE is often used for rapidly integrating ion channel gating variables. We find via simulation studies that for small time steps, both methods are comparable, but at larger time steps, EE performs worse than Euler. We derive error bounds for both methods, and find that the error can be characterized in terms of two ratios: time step over time constant, and voltage measurement error over the slope factor of the steady-state activation curve of the voltage-dependent gating variable. These ratios reliably bound the simulation error and yield results consistent with the simulation analysis. Our bounds quantitatively illustrate how measurement error restricts the accuracy that can be obtained by using smaller step sizes. Finally, we demonstrate that Euler can be computed with identical computational efficiency as EE.
منابع مشابه
Stability of the Modified Euler Method for Nonlinear Dynamic Analysis of TLP
Efficiency of numerical methods is an important problem in dynamic nonlinear analyses. It is possible to use of numerical methods such as beta-Newmark in order to investigate the structural response behavior of the dynamic systems under random sea wave loads but because of necessity to analysis the offshore systems for extensive time to fatigue study it is important to use of simple stable meth...
متن کاملThree dimensional static and dynamic analysis of thick plates by the meshless local Petrov-Galerkin (MLPG) method under different loading conditions
In this paper, three dimensional (3D) static and dynamic analysis of thick plates based on the Meshless Local Petrov-Galerkin (MLPG) is presented. Using the kinematics of a three-dimensional continuum, the local weak form of the equilibrium equations is derived. A weak formulation for the set of governing equations is transformed into local integral equations on local sub-domains by using a uni...
متن کاملEFFICIENT NUMERICAL DYNAMIC ANALYSIS OF TENSION LEG PLATFORMS UNDER SEA WAVE LOADS
However it is possible to use of numerical methods such as beta-Newmark in order to investigate the structural response behavior of the dynamic systems under random sea wave loads but because of necessity to analysis the offshore systems for extensive time to fatigue study it is important to use of simple stable methods for numerical integration. The modified Euler method (MEM) is a simple nume...
متن کاملA General Rule for the Influence of Physical Damping on the Numerical Stability of Time Integration Analysis
The influence of physical damping on the numerical stability of time integration analysis is an open question since decades ago. In this paper, it is shown that, under specific very general conditions, physical damping can be disregarded when studying the numerical stability. It is also shown that, provided the specific conditions are met, analysis of structural systems involved in extremely hi...
متن کاملA numerical scheme for space-time fractional advection-dispersion equation
In this paper, we develop a numerical resolution of the space-time fractional advection-dispersion equation. We utilize spectral-collocation method combining with a product integration technique in order to discretize the terms involving spatial fractional order derivatives that leads to a simple evaluation of the related terms. By using Bernstein polynomial basis, the problem is transformed in...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Journal of neural engineering
دوره 1 4 شماره
صفحات -
تاریخ انتشار 2004